Look at this 1978 proof Eisenhower dollar I found! I think itoght be a S over D. ( sorry for the bad lighting)
its a filled s which is fairly common given the very small size of the mintmark. if it was an over mintmark it would be called an s over d because the correct mm is the s
There's no reason for a D to already be on the special proof blanks that were in San Francisco. In the case of some of the other older S over D or D over S Philly was putting the mintmarks onto the other mints master dies. But they stopped doing that.